Date: Fri Oct 21 08:28:22 2005
Informant Database: Brassica oleracea Database, TIGR 05-2002, 223MB
Gene Model Parameter: At-10-04-2004.zhmm
Conservation Parameter: At-10-04-2004.zhmm
Target sequence length: 3224; Total genes predicted: 1

Positions of Predicted Genes (mouse sensitive)


 
     
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Predicted Genes -- Summary
Gene Gene ID Start End
===============  ===============================  ==========  ========== 
Gene 1 tw1129901355.target.001 487 2072



Visualization of TWINSCAN's GTF2 data results in PDF format

For more information about the output, see TWINSCAN Web Output.

Predicted Genes

Gene 1

>tw1129901355.target.001    start: 487    end: 2072
ExonNum ExonType Strand Begin End Length
===========  ===========  ===========  ===========  ==========  ========== 
>tw1129901355.target.001 coding sequences:
ATGCCGTTAAACGGAGATCTCGACCGTCAGATCGAACAGCTAATGGAGTGTAAGCCGTTAGGTGAAGCAGACGTGAAGATCCTTTGCGATCAAGCTAAAGCGATTCTTGTTGAGGAATAT
AATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGCCAGTTTTATGACCTAATTGAGCTATTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTCTTCATG
GGAGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTCTATTGGTGGCATTAAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGCCGTCAGATT
ACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAATGTGTGGAAGTATTTTACGGACCTTTTCGATTATCTCCCTCTTACAGCACTCATAGAGAGTCAGGTT
TTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACTCTTGACAATATCCGAAGCTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCTGATCCC
GACGATCGTTGTGGATGGGGAATATCTCCTCGTGGTGCTGGTTACACGTTTGGACAGGACATTGCTACTCAGTTTAATCATAACAATGGACTGAGTCTGATCTCAAGAGCGCATCAACTT
GTAATGGAAGGCTATAATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGTGCACCGAACTACTGTTACAGATGTGGAAACATGGCCGCAATTCTTGAGATTGGAGAAAAGATGGAA
CAGAACTTCCTTCAATTCGATCCAGCACCTAGACAAGTCGAACCCGATACCACGCGCAAGACCCCTGATTATTTTTTG
To run nucleotide-nucleotide BLAST against the nr database on the NCBI site, please click below:

  NCBI Nucleotides BLAST

>tw1129901355.target.001 protein sequences:
MPLNGDLDRQIEQLMECKPLGEADVKILCDQAKAILVEEYNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRLTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRSLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIATQFNHNNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGEKMEQNFLQFDPAPRQVEPDTTRKTPDYFL
To run protein-protein BLAST against the nr database on the NCBI site, please click below:

  NCBI protein BLAST

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